PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g19130.1
Common NameLR48_Vigan02g103600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 300aa    MW: 33614.2 Da    PI: 5.0156
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g19130.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-1974122355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  Vang06g19130.1  74 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 122
                     9*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.77573130IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-2273131IPR016177DNA-binding domain
SMARTSM003803.1E-3873136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-3273131IPR001471AP2/ERF domain
PfamPF008476.0E-1274122IPR001471AP2/ERF domain
CDDcd000181.03E-3274131No hitNo description
PRINTSPR003677.6E-127485IPR001471AP2/ERF domain
PRINTSPR003677.6E-1296112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MCGGAIIADF IPRRDRSLAA SDLWPNSFGK DDDFGFGYSQ IANQQPSTVK TAQAPKVSEK  60
VDTKPVKRQR KNLYRGIRQR PWGKWAAEIR DPRKGVRVWL GTFNTAEEAA RAYDREARKI  120
RGKKAKVNFP NEDDEYSIQA RNPIPPLPFA TQKPTPYQQQ YRCDLNNAPT NLNLEFGYDL  180
NHTGAFSSHV DTVNADSVVA SGDENSGLAS GSEGAHSTNE FMGSGEKGNG YFNGTAIEKE  240
KEIEVIEAEE EKNKLQELSE ELMAYENYMK FYQIPYYDGQ SMPPNNVQES VVGDLWSFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2174130663ATERF1
3gcc_A2e-2174130663ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512560.10.0PREDICTED: ethylene-responsive transcription factor RAP2-3-like
TrEMBLA0A0L9TWK70.0A0A0L9TWK7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SSI60.0A0A0S3SSI6_PHAAN; Uncharacterized protein
STRINGGLYMA10G02080.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-36ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]